PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008723-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 359aa    MW: 40584.1 Da    PI: 6.3444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008723-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.8e-23141201259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqKe+ ++++pr+YYrCt++   +C++ k+v++ +e+p+  +i+Y+g+H+++
  AHYPO_008723-RA 141 DDGHAWRKYGQKEILNTNYPRNYYRCTHKhdqKCQAIKQVQQISENPTKYNIIYHGKHTCQ 201
                      8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-24133203IPR003657WRKY domain
SuperFamilySSF1182906.28E-23134203IPR003657WRKY domain
PROSITE profilePS5081120.139135203IPR003657WRKY domain
SMARTSM007748.2E-33140202IPR003657WRKY domain
PfamPF031061.8E-22141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MQVISKFEQA SSPSSSSSSS SMNLMENITK LLEKGQESAQ QIRKLFNEGL RLKVEDDHQA  60
DLDHHSKVTL NSIETALSMI KTYAFDQKDK IKKRKFESPE SPHSTKSDES GGTFVPKERR  120
GCYKRRRGDE SWTVEATALI DDGHAWRKYG QKEILNTNYP RNYYRCTHKH DQKCQAIKQV  180
QQISENPTKY NIIYHGKHTC QNPNKSPSFI IENPEEKLSA TSIYFCFETN NITKSKHALN  240
PSNLFPTSSI NPDPTPVKVI KQEYTLIKEE SSPPLIPIDL DHLSDQTVHN NLQYSSSCSD  300
NHVPSSSDLT SVGLCSTPVS DQGDAISAFD FGTDDDLFNL ITLDDHHYND RLDGMFEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20140201869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694QKDKIKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867482.11e-115probable WRKY transcription factor 70
TrEMBLA0A0K9QFD51e-113A0A0K9QFD5_SPIOL; Uncharacterized protein
STRINGXP_010683475.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-30WRKY DNA-binding protein 70