PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008815-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 453aa    MW: 47794.1 Da    PI: 8.192
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008815-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.64.1e-134468327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      + C +f+rtG C+yGdrC+F+H+p
  AHYPO_008815-RA 44 APDCIYFLRTGVCSYGDRCRFNHPP 68
                     589********************97 PP
2zf-CCCH30.56.3e-107594827
                     GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                     +++rtGtC+yG +Ck++H++
  AHYPO_008815-RA 75 YYMRTGTCRYGTSCKYHHPR 94
                     9*****************96 PP
3zf-CCCH28.82.1e-09115140227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C ++ +tG+Ck+G +CkF+H+p
  AHYPO_008815-RA 115 GEKECAYYIKTGQCKFGMTCKFHHPP 140
                      7899********************97 PP
4zf-CCCH375.6e-12274299126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C+++++tG Ck+G++Ck++H+
  AHYPO_008815-RA 274 PGQPECQHYLKTGDCKFGSSCKYHHP 299
                      5789*********************9 PP
5zf-CCCH30.18.3e-10320346127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++t+ C+++a+   Ck+G++Ck+ H++
  AHYPO_008815-RA 320 PGTPTCSYYAQHRVCKFGPTCKYDHPM 346
                      68***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-74168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7794169IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-104468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-64669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-64768IPR000571Zinc finger, CCCH-type
SMARTSM003560.037194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9627295IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-77494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-67598IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-57598IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028113140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352113141IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6115141IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713273301IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9275299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5277300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4279299IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023319346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5319349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972319347IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-7320346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MESDGSHSDP TPDSDTQPPQ TGLQESMGRL RLENSDAYPE RPGAPDCIYF LRTGVCSYGD  60
RCRFNHPPDR SPPPYYMRTG TCRYGTSCKY HHPRQEANPV SPFALNVYGY PLRPGEKECA  120
YYIKTGQCKF GMTCKFHHPP PSTVPLPTAT QTAVPPAPLA SPTVYSTPTA APQPYGVVSG  180
NWSVAGPSMV PGSYIQGPYG PMLFSSGIVP LPAWGPYSGT TPLTNLNTQS VGAGQFYGFM  240
PLSPSAPAYA GPYQALSSGG PSNVSKEHSY PQRPGQPECQ HYLKTGDCKF GSSCKYHHPV  300
QWGAPETSTA LSAMGLPLRP GTPTCSYYAQ HRVCKFGPTC KYDHPMGTLS YSPSTSSLSD  360
IPVAPYRVGS SVGTVAPSSS SSDFRAELMS GSNKDILTTS SPSVSIPSSS AGSVSSTSGS  420
IFQSNPQQSS QSSASATITS SKGDAGHVGA RS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666382.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-131C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0J8B4L20.0A0A0J8B4L2_BETVU; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-111C3H family protein