PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008864-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 264aa    MW: 29769.8 Da    PI: 6.9559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008864-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.4e-1476128155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      r+++hn+ Er RR++iN  ++ Lr llP+ +   + kKls  +++ ++ +YI +Lq
  AHYPO_008864-RA  76 RKMNHNASERDRRKKINGLYSSLRALLPSiD---HMKKLSIPATVSRVLKYIPELQ 128
                      799**************************99...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-1674147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.15775127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-1275132No hitNo description
PfamPF000103.1E-1176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1376141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-881133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MCPFVPCEYP IPLEIGSNEA FGDFDLDNIF LPDFYCSQVQ VKDHDDHHVK QSESPPSTSS  60
ADHGGGGGGV AVATDRKMNH NASERDRRKK INGLYSSLRA LLPSIDHMKK LSIPATVSRV  120
LKYIPELQKE VKDLTQKKEE LLLSESSFSQ RNSMEFIKEK NGKIRNNIEE KSSTKYSVSV  180
NKMSDKEMII QISTLERISL SEVLMQVEKG GYLIVDVSSF QSFSGRAFHT IHLLMEGINV  240
KNYGNLNGDQ LQFLIQNQRQ MYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835343.13e-87transcription factor ORG2-like
STRINGXP_010673161.12e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-37bHLH family protein