PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008906-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 262aa    MW: 29570.8 Da    PI: 7.0631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008906-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-1373120254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r  h+e+E+rRR+riNs +++Lr++lP        K +Ka+ L k+v+ + +L
  AHYPO_008906-RA  73 RIHHKEAEKRRRERINSHLDRLRSILPCT-----SKTDKATLLSKVVQRVLEL 120
                      889*************************7.....699******9999877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1472134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1273130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-1173123No hitNo description
PfamPF000102.3E-1073120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1077126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.87E-9169250No hitNo description
Gene3DG3DSA:3.30.70.2609.1E-8172224No hitNo description
PROSITE profilePS516719.958173254IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEQFPEDYPN CYSEMDMYRF LSGGGGVNDV VNWPMKFNNN NNNNYSSSGS CSASFYQGFM  60
NETTEAKALA ASRIHHKEAE KRRRERINSH LDRLRSILPC TSKTDKATLL SKVVQRVLEL  120
KRQTSELHQH DNLMIPSEND EFAVYIHNSN TNNQCDNNNN NNNNNNSENN ILKASLCCED  180
RPDLFSDING VLNSLNLKIV RAEISSLGGR IQSVFMVSSD NASSNDQCAV FLRDALKGIV  240
NRSGSEERLK RRRRVFDAAD C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673045.11e-135PREDICTED: transcription factor bHLH106
TrEMBLA0A0K9R2V21e-128A0A0K9R2V2_SPIOL; Uncharacterized protein
STRINGXP_010673045.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-38bHLH family protein