PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008931-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 278aa    MW: 30663.4 Da    PI: 6.6749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008931-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT eEd++l++++ + G g+W++ ++  g+ R++k+c++rw +yl
  AHYPO_008931-RA 14 RGRWTDEEDQKLIKYILENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129422.515965IPR017930Myb domain
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002493.8E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-201588IPR009057Homeodomain-like
CDDcd001673.40E-101661No hitNo description
PROSITE profilePS500903.9562130IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-76588IPR009057Homeodomain-like
SMARTSM007171866137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTDE EDQKLIKYIL ENGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TPEEEEIIIK LHTTLGNRKI HTFRRPNGEG SEEKIIINLS NVSAPPKRRG  120
GRTSRAAMQR NRLNKVMNNN NNNINIALMG PNQVGPSVPK NSTTSNGNLI FDHESELLGI  180
EDIMGLDGLL STTNEDSVME SDAGVGPNES KGPMKMGSIA EDPIHQNITC SGSSGGGSST  240
TTSSSNFEHN FDWDLDIGTV DVVGPEFKLW DEKDQIIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-121288580B-MYB
1h8a_C2e-11128825100MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00668SELEXTransfer from GRMZM2G016020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7072381e-51KJ707238.1 Beta vulgaris subsp. vulgaris cultivar KWS2320 R2R3-MYB flavonol regulator (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836184.11e-108transcription factor MYB11
TrEMBLA0A096ZXF21e-101A0A096ZXF2_BETVU; R2R3-MYB flavonol regulator
STRINGXP_010679349.11e-102(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-55myb domain protein 12