PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008963-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 223aa MW: 25320.1 Da PI: 4.9416

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008963-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.5e-16	6	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ +G g W+t a g++R++k+c++rw +yl AHYPO_008963-RA 6 KGPWSEEEDSKLISSINIHGEGKWNTLAILAGLKRSGKSCRLRWVNYL 53 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.585	1	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-18	3	60	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-13	5	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	6	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.91E-20	6	77	IPR009057	Homeodomain-like
CDD	cd00167	1.65E-10	8	53	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-5	61	78	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MNGLRKGPWS EEEDSKLISS INIHGEGKWN TLAILAGLKR SGKSCRLRWV NYLHPNLQRA 60 EVLPGRTDNN IKNYWRTKVQ KLAKQYDCNV NSSEFRDAIR HVWIPRLSEQ IQASNNTNSS 120 CSTSTTKLGC NYEYGGLSDD HDLYSMPNMI ISNCSDNEPI ISTEICSSSS ADDELWDGIN 180 WDQIDHFLRE MQTLDDDQQA SDVLDTTYNI QQQLDNLASK KI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-12	4	81	5	106	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021769863.1	9e-58	transcription factor MYB2-like
Swissprot	Q2QZJ8	8e-44	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	A0A498HAA4	3e-48	A0A498HAA4_MALDO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	9e-46	myb domain protein 112

Link Out ? help Back to Top
Phytozome	AHYPO_008963-RA

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]