PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008979-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 186aa MW: 20693.7 Da PI: 4.5121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008979-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.3e-10	147	184	2	38
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.S CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.l 38 + hn+rE+ RR+++N+ + +Lr+llP + +a++kK l AHYPO_008979-RA 147 KLDHNAREKVRRKKLNETYLTLRSLLPDSKRAKDKKaL 184 678*************************8677777755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.499	145	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-7	145	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-7	145	179	No hit	No description
SuperFamily	SSF47459	7.2E-8	146	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-7	147	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSNPPFGSVF HDEEDDFSFP YQAPNNEEDP INFPIPPFVQ HQNTNLPTTS SSKPMLDYQD 60 LSIYDYMEDY NTSLLGQYYP NKQDTINWPV TLTEGFDQVQ QGAAEGSLSD HDMQYYNTTA 120 TTTADGQTAA AAVAVVSGVG EGSLSKKLDH NAREKVRRKK LNETYLTLRS LLPDSKRAKD 180 KKALS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770033.1	6e-53	transcription factor bHLH160-like isoform X1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	2e-06	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_008979-RA