PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008983-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 340aa    MW: 37775.2 Da    PI: 6.5912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008983-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.94.9e-34173230259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp++v++tYeg+H+h+
  AHYPO_008983-RA 173 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQSCNVKKRVERSFTDPSIVVTTYEGQHTHP 230
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.9E-962339IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.802.6E-34157230IPR003657WRKY domain
SuperFamilySSF1182905.62E-29164230IPR003657WRKY domain
PROSITE profilePS5081131.043167232IPR003657WRKY domain
SMARTSM007741.2E-40172231IPR003657WRKY domain
PfamPF031066.8E-27173230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEMKEPLKME TLKGGASLNT NNYHYLTENK CSSTTKSLDS QIVLENIYCP SSSTNNNNTG  60
FMELLGMQDM ININPPDLFD IMMMNGDDNQ AFHCSNVNLE SSEVINNNNL PTTPNSTSIS  120
SASNEALNDD QHQDDEQEQK TKKQCTKAKK TNEKRQREAR FAFMTKSEVD HLEDGYRWRK  180
YGQKAVKNSP FPRSYYRCTS QSCNVKKRVE RSFTDPSIVV TTYEGQHTHP CTVLPRGLIS  240
GSGYGSGLNA NIHGAISPFV VPMQMANNNH FQMNYGNSLV PDQLSQFGNV TIGSSVSPSC  300
SLLGTQERCN FGTPLQLNAA LLTDHGLLQD ILPSIMKKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271652291074Probable WRKY transcription factor 4
2lex_A2e-271652291074Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840405e-51GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679416.11e-126PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-56WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0K9RLH11e-102A0A0K9RLH1_SPIOL; Uncharacterized protein
STRINGXP_010679416.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-48WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]