PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009144-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

BES1

Protein Properties

Length: 605aa MW: 69724.1 Da PI: 6.8535

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009144-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	112.6	6.3e-35	74	200	2	133
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 g+gr+++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+reAGw+ G + + +pl++++ ++s +as + + AHYPO_009144-RA 74 GKGRREREREKERTKLRERHRRAITSRMLSGLRQYGNFPLPARADMNDVLAALAREAGWIG---GLPVKSSESPLSASSLKNRSMKASLDCQPT 164 789********************************************************95...888888889998888888888887776655 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa 133 + + ++s +++ ++ ++++ s+s+ ++ AHYPO_009144-RA 165 --VLGIDENLSIASLDSVMVTDMETKSEKYTSTSNIES 200 ..444444444444444444444444444433333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	8.6E-31	74	133	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.9E-140	210	605	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.1E-146	210	535	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.8E-74	222	531	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	235	249	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	256	274	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	278	299	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	371	393	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	444	463	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	478	494	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	495	506	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-46	513	536	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MNNAGKNTTP TTFNRIESQQ NPQNLTPQIP NPNPNNFSQS NSHHYQLISQ QQQNNRRPRG 60 FAVAANNSPA SGDGKGRRER EREKERTKLR ERHRRAITSR MLSGLRQYGN FPLPARADMN 120 DVLAALAREA GWIGGLPVKS SESPLSASSL KNRSMKASLD CQPTVLGIDE NLSIASLDSV 180 MVTDMETKSE KYTSTSNIES TDSLEAHQSG IINSYCQLLD PEGIRQELKH LKSLNVDGVV 240 VDCWWGIVEG WNPQKYMWLG YRELFTIIRE FQLKVQVVLA FHEYGGSDSG NVFISLPHWV 300 LEIGKDNQEI FFTDREGRRN TECLSWGIDK ERVLRGRTGI EVYFDFMRSF RSEFDDIFCE 360 GLITAVEIGL GPSGDLKYPS FPERLGWRYP GIGEFQCYDR YMQQNLRKAA KLRGHSYWAR 420 GPDNAGNYNS KPSETGFFRE RGDYDSYFGR FFLHWYAQML IDHADNVLSL ARLAFDETQI 480 VVKIPAVHWW YKTPSHAAEL TAGFYNPTNR DGYSPVFDVL RKHSVTVKLV CPRSHVHFRD 540 NDESFADPED PCFDREEHLR MIETSKPRDD PDHHHFSFFQ YQLPPPFVQR EYCFSELDYF 600 IKCMH

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MNNAGKNTTP TTFNRIESQQ NPQNLTPQIP NPNPNNFSQS NSHHYQLISQ QQQNNRRPRG  60
FAVAANNSPA SGDGKGRRER EREKERTKLR ERHRRAITSR MLSGLRQYGN FPLPARADMN  120
DVLAALAREA GWIGGLPVKS SESPLSASSL KNRSMKASLD CQPTVLGIDE NLSIASLDSV  180
MVTDMETKSE KYTSTSNIES TDSLEAHQSG IINSYCQLLD PEGIRQELKH LKSLNVDGVV  240
VDCWWGIVEG WNPQKYMWLG YRELFTIIRE FQLKVQVVLA FHEYGGSDSG NVFISLPHWV  300
LEIGKDNQEI FFTDREGRRN TECLSWGIDK ERVLRGRTGI EVYFDFMRSF RSEFDDIFCE  360
GLITAVEIGL GPSGDLKYPS FPERLGWRYP GIGEFQCYDR YMQQNLRKAA KLRGHSYWAR  420
GPDNAGNYNS KPSETGFFRE RGDYDSYFGR FFLHWYAQML IDHADNVLSL ARLAFDETQI  480
VVKIPAVHWW YKTPSHAAEL TAGFYNPTNR DGYSPVFDVL RKHSVTVKLV CPRSHVHFRD  540
NDESFADPED PCFDREEHLR MIETSKPRDD PDHHHFSFFQ YQLPPPFVQR EYCFSELDYF  600
IKCMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-108	210	570	21	374	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858576.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0K9QGA3	0.0	A0A0K9QGA3_SPIOL; Beta-amylase
STRING	XP_010676684.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	AHYPO_009144-RA

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]