PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009216-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 93aa    MW: 10751 Da    PI: 4.4664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009216-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-082671144
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +  WT+eE +++ +  ++l  +    ++ Ia +++ g+t  q+k ++
  AHYPO_009216-RA 26 KEEWTKEENKIFENSLAELDFNrvdFFEQIALRLP-GKTIDQIKKHY 71
                     578********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-62076IPR009057Homeodomain-like
SMARTSM007177.3E-72577IPR001005SANT/Myb domain
PfamPF002495.6E-62672IPR001005SANT/Myb domain
SuperFamilySSF466894.26E-92683IPR009057Homeodomain-like
CDDcd001670.00253675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MYSISSSQNS SKTSPVKLTE ENQKEKEEWT KEENKIFENS LAELDFNRVD FFEQIALRLP  60
GKTIDQIKKH YEALVNDIAR IDSGEFDSLI MY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074066.19e-19transcription factor DIVARICATA-like
STRINGERN171125e-16(Amborella trichopoda)
STRINGXP_010034716.12e-15(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-10MYB family protein