PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009365-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 621aa    MW: 69327 Da    PI: 4.7507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009365-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51111391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptd el+++yL+ kv+gk+ e+  +i+evdi++vePwdLp+  ++k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++
  AHYPO_009365-RA  11 LPLGFRFRPTDIELIDHYLRLKVNGKHSEV-ACIREVDICRVEPWDLPAmsAIKTNDLEWFFFCPRDQKYPNGNRSNRATEAGYWKATGKDRTI 103
                      699************************999.88***************4346777778************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s+k   +g+kktLvfy+grapkg++t Wv+heyr+
  AHYPO_009365-RA 104 KSRKMGIIGMKKTLVFYTGRAPKGQRTPWVIHEYRA 139
                      **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-584162IPR003441NAC domain
PROSITE profilePS5100555.13811162IPR003441NAC domain
PfamPF023651.0E-2512138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGSLATPFES LPLGFRFRPT DIELIDHYLR LKVNGKHSEV ACIREVDICR VEPWDLPAMS  60
AIKTNDLEWF FFCPRDQKYP NGNRSNRATE AGYWKATGKD RTIKSRKMGI IGMKKTLVFY  120
TGRAPKGQRT PWVIHEYRAT QPELDGSHPG QAAFVLCRLF KKVDDPKPED NDDGSHIDEV  180
ETNIDSPNPT TITQEDIRSE AAVIQASPLS VEQSVEQQSV SQNCAVKTPE SLTTDTAFPD  240
RPMLNEVMTP GVESFYDHDL SELYFNFNSM HENQGHGCMD DIFTSQMDDG QNGLHIQDIN  300
GPDPISHFLD SVLIHSDAPN CKEAGHQGAV IAESDSWKNT SIKESGSCCE SDVEIAQQQH  360
DVGFVNSMPS NKNYNEPNGN KELFQDQFWD DDDGDVFSDA SLYQFCNSQG IPEAINYNPP  420
LPASFVEAED RTQFVGNNGI QIRARGRQLP QAYFSEQGSA PRRLRLQREP NSTVTEDSTI  480
APRVKSVCLE GSAIPPHDDI LCLDDLGENT DEPGSSANEA VGTGVQIKPR PRESRARTSD  540
FPEQGTAHRR LRLQQKRHSA FSDESDEKQC ADETKLEPDQ KSSSSKRPTP VRMFKVVIVV  600
VFITVCFSLL ISRNVFLISS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-411016219168NAC domain-containing protein 19
3swm_B1e-411016219168NAC domain-containing protein 19
3swm_C1e-411016219168NAC domain-containing protein 19
3swm_D1e-411016219168NAC domain-containing protein 19
3swp_A1e-411016219168NAC domain-containing protein 19
3swp_B1e-411016219168NAC domain-containing protein 19
3swp_C1e-411016219168NAC domain-containing protein 19
3swp_D1e-411016219168NAC domain-containing protein 19
3ulx_A1e-411016514171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858555.10.0NAC domain-containing protein 62-like isoform X1
TrEMBLA0A1B2RWD50.0A0A1B2RWD5_9CARY; NAC transcription factor 7
STRINGXP_010671302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-89NAC transcription factor-like 9