PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009477-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 284aa    MW: 31064.5 Da    PI: 6.2828
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009477-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16214250135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  AHYPO_009477-RA 214 CRHCGISDkaTPMMRRGPEGPRTLCNACGLMWANKGT 250
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.7E-1171106IPR010399Tify domain
PROSITE profilePS5132015.27171106IPR010399Tify domain
PfamPF062005.6E-1375105IPR010399Tify domain
PfamPF062033.2E-16138180IPR010402CCT domain
PROSITE profilePS5101713.245138180IPR010402CCT domain
PROSITE profilePS501148.708208269IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-11208261IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12210259No hitNo description
Gene3DG3DSA:3.30.50.108.6E-15212255IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.42E-14214264No hitNo description
PfamPF003202.2E-14214250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDDLHGDDAQ MHMTEAEQQM HVHYGMHHLS NGAGMEDDHD DGAVGTGEGI DGELHNDLGN  60
VSDNHGGMIV ASGDNNQLTL SFQGQVYVFD SVSPEKVQAV LLLLGGREVP STIPTAPPTS  120
HDNRGVAPTP QRFNVPQRLA SLLRFREKRK ERNFDKKIRY TVRKEVALRM QRNKGQFTSS  180
KPSQDESSSG ATSLESNQSW GPDGPVPLQQ EVCCRHCGIS DKATPMMRRG PEGPRTLCNA  240
CGLMWANKGT LRDLSKSAVS GVQNVPFSRN EEQNGNFLDN QMV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696086.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-119GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0J8BB740.0A0A0J8BB74_BETVU; Uncharacterized protein
STRINGXP_010696086.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-121ZIM-LIKE 2