PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009515-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

ZF-HD

Protein Properties

Length: 286aa MW: 31290.8 Da PI: 6.507

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009515-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106	2.2e-33	71	125	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrY+eClkNhA+++GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e++ AHYPO_009515-RA 71 VVRYRECLKNHAVNMGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETD 125 689***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-23	70	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.7E-30	72	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-29	73	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.612	74	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.28E-18	217	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-30	221	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-26	222	278	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEFEDEHDEE QEEEDDDEEE ITIPPPPPQT QPQQPPGLVI PPGYDSIGVI NSVPSRSRVN 60 QSSIGERRSG VVRYRECLKN HAVNMGGHAV DGCGEFMAAG EEGTLDALKC AACNCHRNFH 120 RKETDIISSS ETTMGPSPSQ PSTTPPAGAL YPQFSAYYRT PAPASYHMGP QSHHYRPLAA 180 LPSTSGGTHS GDDVSHPSSS GGDGRRDSGV GIGVGIGMMV PKKRHRTKFS QEQKDKMLEF 240 AEKLGWRIQK HDEAAVQQFC AEIQVKRQVL KVWMHNNKHT LGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-26	223	280	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740312.1	1e-118	zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	3e-76	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0K9RPV6	1e-104	A0A0K9RPV6_SPIOL; Uncharacterized protein
STRING	XP_010675490.1	1e-105	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-64	homeobox protein 22

Link Out ? help Back to Top
Phytozome	AHYPO_009515-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]