PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009589-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 283aa    MW: 30893.8 Da    PI: 4.5132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009589-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-184796255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  AHYPO_009589-RA 47 LYRGVRKRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 96
                     69****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.81E-3446106No hitNo description
PfamPF008471.1E-124696IPR001471AP2/ERF domain
PROSITE profilePS5103223.57847104IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2147105IPR016177DNA-binding domain
SMARTSM003802.3E-3747110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3147105IPR001471AP2/ERF domain
PRINTSPR003672.2E-104859IPR001471AP2/ERF domain
PRINTSPR003672.2E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTPKKDHINY PDSSDTSPTS SFSTDDNQVQ TCTKINNNKQ MDTKHPLYRG VRKRAWGKWV  60
SEIREPRKKS RIWLGTFSTP EMAARAHDVA ALSIKGSSAV LNFPDLASSL PRPVSKSPRD  120
VQLAAAKAAN LEFDLVNNNN NNDNHNDNNS STAAASMSAA VQKESDGAAD AASVAPCSPS  180
TSSDTELSSD SNSTMNSSPT TLVSDEEHLL EEIVELPSLE DVTGFDSGEI LDKTWLMYEC  240
FDSDPFLQCW VNNGNNSSME GYFGEQGLSF NTSCFDHLLW LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1936104372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688291.13e-97PREDICTED: ethylene-responsive transcription factor ERF043
TrEMBLA0A0K9R3G01e-81A0A0K9R3G0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688291.11e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.18e-49ERF family protein