PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009623-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 110aa    MW: 13322.2 Da    PI: 9.9416
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009623-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182475556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++ e +++Le++Fe++++++ e++ ++Ak++gL+ rqV +WFqNrRa+++
  AHYPO_009623-RA 24 NRLSIEKVKALEKHFEEENKLQPERKMKIAKEVGLEPRQVAIWFQNRRARWR 75
                     55788999*******************************************9 PP
2HD-ZIP_I/II114.56.5e-3722109289
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      kk rls e+vk+LE++Feee+kL+perK+++a+e+gl+prqva+WFqnrRAR++tk+lEk+y++L+++ydalk +  +L++++ +L +
  AHYPO_009623-RA  22 KKNRLSIEKVKALEKHFEEENKLQPERKMKIAKEVGLEPRQVAIWFQNRRARWRTKHLEKEYDHLRANYDALKLNYGSLQQQKCSLLQ 109
                      9*********************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.6331777IPR001356Homeobox domain
SMARTSM003893.3E-141981IPR001356Homeobox domain
SuperFamilySSF466896.27E-182189IPR009057Homeodomain-like
CDDcd000863.99E-112278No hitNo description
PfamPF000466.2E-162475IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-192584IPR009057Homeodomain-like
PRINTSPR000311.8E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.8E-55773IPR000047Helix-turn-helix motif
PfamPF021834.2E-977110IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSAQKERIEE EDNEEKNGQI MKKNRLSIEK VKALEKHFEE ENKLQPERKM KIAKEVGLEP  60
RQVAIWFQNR RARWRTKHLE KEYDHLRANY DALKLNYGSL QQQKCSLLQQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859256.13e-51homeobox-leucine zipper protein ATHB-6-like
SwissprotP466671e-34ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A0K9QYP12e-43A0A0K9QYP1_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010675091.11e-48(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-33homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]