PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009646-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 419aa    MW: 45234.2 Da    PI: 6.3585
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009646-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.42.4e-16208260355
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      ++kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l   +++
  AHYPO_009646-RA 208 DVKRVKRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVSQK 260
                      689****************************************9888766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.5E-13205262No hitNo description
SMARTSM003382.4E-20206270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.427208262IPR004827Basic-leucine zipper domain
PfamPF001706.2E-15209258IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.39E-12210259No hitNo description
CDDcd147023.10E-6211262No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
PfamPF124986.0E-37277402IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDRVFSVGDI SDQFWSPPPQ PPPLNDDPIM NRSPSEWAFQ RFLQEASPLS DTSSSKSLAE  60
NDVVELKDSH HQTNNDITSK MESIVHQGSS SVAIDSDKYQ AILKSKLNLA CAAVAMTRAP  120
FVINQNQSSV GAAESATQGS ADSKPDSHRP CKGSQDKEAK PVGIPSLPAV PKKPLTQAKQ  180
ATSYSSDQSD DDDLDCENEI TDNMDPADVK RVKRMLSNRE SARRSRRRKQ AHLTELETQV  240
SQLRGENSSL LKRLTDVSQK FNDAAVDNRV LKADVETLRA KVKMAEESVK GITGINPLLQ  300
AMSEISSMGM TSFSGSPSDS TDAAVPVQDR PNQTHLYQPV DTSLPGSNPR VDNGVSDIIS  360
SLDHALQNAA PHVLGGSKIG RTASMQRVAS LEHLQKRIRG GMNQGSPQPP QGHGGPDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229RRSRRRKQ
2224229SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674829.10.0PREDICTED: light-inducible protein CPRF2
SwissprotQ990901e-110CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0K9RTS90.0A0A0K9RTS9_SPIOL; Uncharacterized protein
STRINGXP_010674829.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.23e-64bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]