PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009655-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C3H

Protein Properties

Length: 418aa MW: 47454.6 Da PI: 7.6879

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009655-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.9e-06	77	92	5	20
--SGGGGTS--TTTTT CS zf-CCCH 5 lCrffartGtCkyGdr 20 C+f++rtG Ck+G r AHYPO_009655-RA 77 DCNFYLRTGSCKFGKR 92 5*************76 PP
2	zf-CCCH	34.6	3.3e-11	270	295	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++tG Cky + C+++H+ AHYPO_009655-RA 270 PGQPDCDFFMKTGDCKYRAACRYNHP 295 5789*********************8 PP
3	zf-CCCH	23.4	1e-07	363	386	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+ + GtCkyG +C F H++ AHYPO_009655-RA 363 KICQSYKLQGTCKYGKTCIFDHPK 386 68********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	7.545	72	92	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.822	102	130	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7	102	129	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.544	269	297	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	269	296	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-7	271	295	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.868	359	387	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-5	359	386	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0017	361	386	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-5	363	386	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	363	384	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGSCEDMGVS FENQDEIKLG TLVSSNGTHH EDQQPTEEEV LAKQLESVVL QAIEEEEKQN 60 EGAKKSHIYP LRPYAIDCNF YLRTGSCKFG KRAENYKTTM VDTGKIDCKY FQTPGGCRHR 120 DAWKYYHSMQ KPENERLVLN FLGLPVRPSE QEFNHPGPYA AKKSNHRNSL ANDAYMRGGN 180 NLSRIYPGEK LQSCRISRGI TDLSNDITLM NSSPYDQPCY HRPMTPNPAC NQDQVKLMAR 240 LPHQILSVKK LDSSANNEQV MQSDEFPVRP GQPDCDFFMK TGDCKYRAAC RYNHPISRSS 300 KLRLPPLLFK RLYSKSQLNG QYPEQPRNRL STCIQCALNE SGLPLRPVCS QFLSLYPNIL 360 GSKICQSYKL QGTCKYGKTC IFDHPKNCSF AVFDHDNGED FSSTDPVVVD LEPCVVDN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGSCEDMGVS FENQDEIKLG TLVSSNGTHH EDQQPTEEEV LAKQLESVVL QAIEEEEKQN  60
EGAKKSHIYP LRPYAIDCNF YLRTGSCKFG KRAENYKTTM VDTGKIDCKY FQTPGGCRHR  120
DAWKYYHSMQ KPENERLVLN FLGLPVRPSE QEFNHPGPYA AKKSNHRNSL ANDAYMRGGN  180
NLSRIYPGEK LQSCRISRGI TDLSNDITLM NSSPYDQPCY HRPMTPNPAC NQDQVKLMAR  240
LPHQILSVKK LDSSANNEQV MQSDEFPVRP GQPDCDFFMK TGDCKYRAAC RYNHPISRSS  300
KLRLPPLLFK RLYSKSQLNG QYPEQPRNRL STCIQCALNE SGLPLRPVCS QFLSLYPNIL  360
GSKICQSYKL QGTCKYGKTC IFDHPKNCSF AVFDHDNGED FSSTDPVVVD LEPCVVDN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010674845.1	1e-131	PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBL	A0A0K9QFH9	1e-124	A0A0K9QFH9_SPIOL; Uncharacterized protein
STRING	XP_010674845.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-35	C3H family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009655-RA