PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009748-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 131aa    MW: 14168.2 Da    PI: 10.144
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009748-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-182458135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+tt+TplWR gp g+ktLCnaCG++y k+++
  AHYPO_009748-RA 24 CTDCQTTTTPLWRGGPAGPKTLCNACGIKYHKRRR 58
                     *******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-141877IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.9411853IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-132158No hitNo description
CDDcd002025.94E-132358No hitNo description
Gene3DG3DSA:3.30.50.101.5E-152357IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003205.6E-162458IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MLDLKVEQCS VSESQSSSFE LKRCTDCQTT TTPLWRGGPA GPKTLCNACG IKYHKRRRAL  60
LGLEKGKVDK NKKKTSSSNG SSSSNNNGGL GMPFKIKVIR QSTDNFRDKL GEVEQAAMLL  120
MALSYGSVYA *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684625.14e-56PREDICTED: GATA transcription factor 15 isoform X1
SwissprotQ9FJ104e-28GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0K9QQS09e-39A0A0K9QQS0_SPIOL; Uncharacterized protein
TrEMBLA0A0K9QSF51e-38A0A0K9QSF5_SPIOL; Uncharacterized protein
STRINGXP_010684625.12e-55(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-26GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]