PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009805-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 482aa MW: 54527.6 Da PI: 6.3826

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009805-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	370	417	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 ++WT +E lv++ q+G+g+W+++ r + +Rt+ +++++w+++ AHYPO_009805-RA 370 KPWTLDEVVALVNGMSQFGTGQWTSVKRAFFssSNRTATDIRDKWRNL 417 69**************************99************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-11	363	421	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.383	364	422	IPR017930	Myb domain
SuperFamily	SSF46689	1.5E-13	366	431	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-9	368	420	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-7	370	417	IPR001005	SANT/Myb domain
CDD	cd11660	1.41E-16	370	419	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MNEVKNAEHY VSDIAYEGSG TGHIWAQPKN DESSAFYLDA NFEKAFKIDD ISSVFHYELI 60 NKNGGLNSCM TEGKDDIRCS DFDEMLHEVE MINLPIAVSF SHASEDQLFD VDFAKKVPDL 120 DYKFCDDVTA EDLKSEHHSP GTSNEEVGLS QSSIVEPRCF NKQFGKATPD EIDGDSGNKC 180 YNRPVQNKMK LKSLRTRECE IEAVQKTSDI QYTLENTCSF GHDRKENHFS LSSVKAPCTS 240 ICTNDEVDSV SQCTEVEDFC VDEFSTDSCA ETKIVTTRQR RLSKPPQRYV DGSPWLKSRL 300 HRAKKHPPSL LKDEDLEVSS QKYCRNASKI RASKCWASNV ELDSDEEYEP DSSCLNRNSM 360 KRGDRRKNSK PWTLDEVVAL VNGMSQFGTG QWTSVKRAFF SSSNRTATDI RDKWRNLVKT 420 NSRSLRPRKD DHNKSGSQLL PKTLIERVKE IANNSPVRKS TSRRGKQLQD SRCSSIPPLA 480 E*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MNEVKNAEHY VSDIAYEGSG TGHIWAQPKN DESSAFYLDA NFEKAFKIDD ISSVFHYELI  60
NKNGGLNSCM TEGKDDIRCS DFDEMLHEVE MINLPIAVSF SHASEDQLFD VDFAKKVPDL  120
DYKFCDDVTA EDLKSEHHSP GTSNEEVGLS QSSIVEPRCF NKQFGKATPD EIDGDSGNKC  180
YNRPVQNKMK LKSLRTRECE IEAVQKTSDI QYTLENTCSF GHDRKENHFS LSSVKAPCTS  240
ICTNDEVDSV SQCTEVEDFC VDEFSTDSCA ETKIVTTRQR RLSKPPQRYV DGSPWLKSRL  300
HRAKKHPPSL LKDEDLEVSS QKYCRNASKI RASKCWASNV ELDSDEEYEP DSSCLNRNSM  360
KRGDRRKNSK PWTLDEVVAL VNGMSQFGTG QWTSVKRAFF SSSNRTATDI RDKWRNLVKT  420
NSRSLRPRKD DHNKSGSQLL PKTLIERVKE IANNSPVRKS TSRRGKQLQD SRCSSIPPLA  480
E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010684090.1	0.0	PREDICTED: uncharacterized protein LOC104898683
TrEMBL	A0A0K9QGE2	0.0	A0A0K9QGE2_SPIOL; Uncharacterized protein
STRING	XP_010684090.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-17	TRF-like 6

Link Out ? help Back to Top
Phytozome	AHYPO_009805-RA