PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009847-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 375aa MW: 42449 Da PI: 9.2212

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009847-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.7e-19	39	124	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt++e+laLi+++++++ +lrr +l+ ++We+v++ + + +s+ qC++k+e+l+kry+++k++ + s s + ++f AHYPO_009847-RA 39 CWTQDETLALINVYQDKWYSLRRCNLRTADWEAVADEVnrrcPNQDTPKSSAQCRHKMEKLRKRYRAEKQRIASLPSHISYNNRFF 124 8********************************9997777888999********************9998766555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-20	38	138	No hit	No description
PROSITE profile	PS50090	6.051	40	100	IPR017877	Myb-like domain
SMART	SM00595	4.4E-4	47	143	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MASPSPSDNP YPATDNPNPN SNPNPNPSPP TTRKFPAPCW TQDETLALIN VYQDKWYSLR 60 RCNLRTADWE AVADEVNRRC PNQDTPKSSA QCRHKMEKLR KRYRAEKQRI ASLPSHISYN 120 NRFFPPSSWV FFDLMDAMEI GPASRSGSVS GVIPISINSN NANDVNLLKD RNELSMIQNG 180 GFVKEEKKEK NDLGKYFDEI LMGMDKRVGS GSGSGSGSMK FKLKNPNHND RYIHEGDQGY 240 DNDYNKIGRN TVSGFMKRKF DNGGGGGERF GYGEDSSSSK MMFLNECSTK KGVGLRERGE 300 DAVVEEMAAS IKLLAEGLVR METMKIEMMQ DIERKRMEME MKRNEMMLES QHNIINAFIQ 360 GLKKHKKVKV MQEQ*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MASPSPSDNP YPATDNPNPN SNPNPNPSPP TTRKFPAPCW TQDETLALIN VYQDKWYSLR  60
RCNLRTADWE AVADEVNRRC PNQDTPKSSA QCRHKMEKLR KRYRAEKQRI ASLPSHISYN  120
NRFFPPSSWV FFDLMDAMEI GPASRSGSVS GVIPISINSN NANDVNLLKD RNELSMIQNG  180
GFVKEEKKEK NDLGKYFDEI LMGMDKRVGS GSGSGSGSMK FKLKNPNHND RYIHEGDQGY  240
DNDYNKIGRN TVSGFMKRKF DNGGGGGERF GYGEDSSSSK MMFLNECSTK KGVGLRERGE  300
DAVVEEMAAS IKLLAEGLVR METMKIEMMQ DIERKRMEME MKRNEMMLES QHNIINAFIQ  360
GLKKHKKVKV MQEQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841225.1	1e-107	trihelix transcription factor ASIL2-like
TrEMBL	A0A0K9QYJ4	1e-106	A0A0K9QYJ4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-32	Trihelix family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009847-RA