PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009950-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 440aa MW: 48287.5 Da PI: 5.5561

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009950-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	290	337	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++sLq AHYPO_009950-RA 290 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATVLDEIINYVQSLQ 337 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-16	284	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.03E-11	284	341	No hit	No description
PROSITE profile	PS50888	15.802	286	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	286	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	290	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEKEINCSNY GLMEISSEQL SNCYFHPNWE DSIPTMDQND PFESTLSSIV SSPTITSSNG 60 VGDGMMIKEL IGRLGSICDS GNNSTITSSY STPLNSPPSK FNLSSLLMMG NNSGNYPIQK 120 NLGSFDTDPG FVERAAKFSC FGSGNSNNID DGKSGMKLES GKLSRVNSDK KLGDNGEFGD 180 SREGSSVSEQ NPGAQIGVKL QNDTHSKKRK SVSRAKKIND KVEVENEESN SKRKKVDDDD 240 KEAKKENAEE NRGESNDINK EKQKNNEATK AEAPKDYIHV RARRGQATDS HSLAERVRRE 300 KISERMKFLQ DLVPGCNKVT GKATVLDEII NYVQSLQRQV EMFHSRGSPL PQAMYPIDQN 360 SAQALPFGYQ STQPLSYPLQ NGVPNGIENH FPANNMNSNG IGQNPNDDLQ SIVQMGIVQN 420 QTQNVPIGTM PNAQMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEKEINCSNY GLMEISSEQL SNCYFHPNWE DSIPTMDQND PFESTLSSIV SSPTITSSNG  60
VGDGMMIKEL IGRLGSICDS GNNSTITSSY STPLNSPPSK FNLSSLLMMG NNSGNYPIQK  120
NLGSFDTDPG FVERAAKFSC FGSGNSNNID DGKSGMKLES GKLSRVNSDK KLGDNGEFGD  180
SREGSSVSEQ NPGAQIGVKL QNDTHSKKRK SVSRAKKIND KVEVENEESN SKRKKVDDDD  240
KEAKKENAEE NRGESNDINK EKQKNNEATK AEAPKDYIHV RARRGQATDS HSLAERVRRE  300
KISERMKFLQ DLVPGCNKVT GKATVLDEII NYVQSLQRQV EMFHSRGSPL PQAMYPIDQN  360
SAQALPFGYQ STQPLSYPLQ NGVPNGIENH FPANNMNSNG IGQNPNDDLQ SIVQMGIVQN  420
QTQNVPIGTM PNAQMKVEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673318.1	0.0	PREDICTED: transcription factor bHLH78
TrEMBL	A0A0K9QN73	0.0	A0A0K9QN73_SPIOL; Uncharacterized protein
STRING	XP_010673318.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009950-RA