PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009973-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 336aa MW: 36993.8 Da PI: 9.7387

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009973-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.1	9.1e-14	265	307	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Leae ++L+ AHYPO_009973-RA 265 RRQKRMIKNRESAARSRARKQAYTHELENKVLRLEAEIERLRR 307 79************************************99993 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.4E-12	258	307	No hit	No description
SMART	SM00338	9.8E-10	261	329	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.611	263	307	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-9	265	309	No hit	No description
CDD	cd14707	1.30E-20	265	310	No hit	No description
Pfam	PF00170	1.7E-10	265	307	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	268	283	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGTQTMGSQG GIGDSSLTKV PTLPRQGSLY SLTLDEVENQ LGNLGKPLIS MNLDELLRNV 60 RNVWTLETGG SSNIHDGVQN LNQEAPRPSL NRQSSFNLSG DLSKKTVDEV WREIQQVKKS 120 SQERNPERQN TLGEMTLEEF LVEAGVVMDV VGGDGNGNGV EAGNVDPNGG RHSIVPQGPQ 180 HGQWMPYQML PQQQHHSMMT MFMPGHGHHV PQPLAMSGGA LPDSAFPDAQ LAVSTTPLMG 240 TVSDTQAIGR KRHASGDVVE RTVERRQKRM IKNRESAARS RARKQAYTHE LENKVLRLEA 300 EIERLRRMRE AEKVLPSVPP PQPKFKLRRT SSAPL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673247.1	1e-169	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_019103829.1	1e-169	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	7e-86	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0K9R5G7	1e-152	A0A0K9R5G7_SPIOL; Uncharacterized protein
STRING	XP_010673247.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-71	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	AHYPO_009973-RA

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]