PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009981-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 166aa    MW: 18709.4 Da    PI: 6.2479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009981-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12652346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                     +WT eE++ + +a++ +  +    +W++Ia++++ ++t k++k ++ +
  AHYPO_009981-RA  6 SWTREEEKAFENAIATHSFDksneQWDKIASMVP-TKTIKEIKQHYED 52
                     6*********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.367158IPR017884SANT domain
SMARTSM007179.1E-10356IPR001005SANT/Myb domain
PfamPF002491.5E-11653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-7653IPR009057Homeodomain-like
CDDcd001671.78E-9654No hitNo description
SuperFamilySSF466893.8E-11660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPNLVSWTRE EEKAFENAIA THSFDKSNEQ WDKIASMVPT KTIKEIKQHY EDLFEDVCAI  60
EAGKVPLPNY GNDENTLSNA NDRDDHNHTT FSKEQGGNTN QGNGYSAFGP SAVGNSAKSS  120
SKLDQERKKG IPWTEEEHRT RQIRERRLEE HIKKLCGNKN TNTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748976.11e-67transcription factor SRM1-like
TrEMBLA0A0K9R1X84e-61A0A0K9R1X8_SPIOL; Uncharacterized protein
STRINGXP_010673224.11e-62(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-31MYB family protein