PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010011-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 433aa    MW: 47249.8 Da    PI: 7.204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010011-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.8e-126489227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C+f++rtG C++G++C+F+H+p
  AHYPO_010011-RA 64 GEPDCSFYLRTGLCRFGSTCRFNHPP 89
                     6899********************97 PP
2zf-CCCH314.4e-1094113827
                      GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                      +f++tGtCk+G++CkF+H++
  AHYPO_010011-RA  94 YFLKTGTCKFGATCKFHHPK 113
                      8*****************96 PP
3zf-CCCH35.61.6e-11134159227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C +++rtG+Ck+G++Ck++H++
  AHYPO_010011-RA 134 DESECAYYLRTGQCKFGSTCKYHHPQ 159
                      6789********************97 PP
4zf-CCCH37.92.9e-12287313127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ C+F+H++
  AHYPO_010011-RA 287 PGQPECQYYMKTGDCKFGAVCRFHHPR 313
                      5789*********************96 PP
5zf-CCCH40.16e-13333359127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  AHYPO_010011-RA 333 PGEPLCIFYSRYGICKFGPNCKFDHPM 359
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.6E-66289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4466390IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-96489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-56790IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-46888IPR000571Zinc finger, CCCH-type
SMARTSM003560.01790113IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-894113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-494112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.56894114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878132160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6134160IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4134159IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4138158IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493286314IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6290316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5292314IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84332360IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4337357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSFRDVVVVD DHDDTTTMPI SRPSVVDGSS SLLVQDSMWP VNLRSSESMD TGIYPPGPYP  60
EHEGEPDCSF YLRTGLCRFG STCRFNHPPN RKLYFLKTGT CKFGATCKFH HPKDKAGIAG  120
RVPLNVFGYP LRPDESECAY YLRTGQCKFG STCKYHHPQP SASFPGSSVY PAVQSPTTPG  180
QQSYPGGLTN WSLSRASIIH SPRWQGPSSY APLILPQGMV SVPGWNAYMG QMGSVSSAEG  240
QQQTAGNNPG YATTRQSESA VSASYRSGSA PMGYYALQRD NVFPERPGQP ECQYYMKTGD  300
CKFGAVCRFH HPRERLIPAP DCLLSALGLP LRPGEPLCIF YSRYGICKFG PNCKFDHPMG  360
IFAYNVSPTS TGTSTMRRYL GSSSVSGGLT LTSEGLVETA GPGKNRRLSL SETRDIQSCD  420
DDDDDDDGET DR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734383.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0K9QBJ80.0A0A0K9QBJ8_SPIOL; Uncharacterized protein
STRINGXP_010673925.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1