PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010038-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 649aa    MW: 72440.6 Da    PI: 6.053
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010038-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12598646147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r+rWT++E++ l ++vk++G   Wk I ++     + Rt+ ++k++w++ 
  AHYPO_010038-RA 598 RKRWTPQEEDALREGVKRFGRS-WKNILECYRvvfEDRTDIDLKDKWRNM 646
                      89******************55.*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.473593648IPR017930Myb domain
SuperFamilySSF466891.35E-12595647IPR009057Homeodomain-like
SMARTSM007173.5E-6597648IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-12598647IPR009057Homeodomain-like
PfamPF002497.8E-10598646IPR001005SANT/Myb domain
CDDcd116601.50E-15599648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MDEKVAKWII EFLLRKPIID EKIIDGVLSC LPFSITDYRL KKTLLLRKID SETTNGSVSE  60
KLLELLETVE ELDHREGKIA SDKLKGAYCA VAVDCTLRFL EENVEENGKY FEAVERIWRN  120
RVCHMEGLAS DESNHWLQDI EAAIWNSELR EKILKRNTRN EALKAVRGYL KEAWKSMGPA  180
FLELVAAKVG DEVEKLLCDA VVSSDNPCRE LVAFQVKTCR TMDEKLPTCT MDKWQAHQCG  240
SSASDLHPDA CQEACAPSVT KVTDNSNDVK AAANGFNPDM YLPELTRVQK CSSFANDLQP  300
DACQAARAPS VTKVIDNSND VKTAENGTNP VMPSPGVTKV QECSSSVSDL QHVASQAARG  360
PGVSKVADNS NDVKAAENKT NPVIHSPEVT RVQEALRLSA RELRAAVTDP LPEAVEMAKS  420
VCSKAGTYNH EAVVGNQKGA EACIVPEVGR VQQAHETSSA EVQATGKNPS ADASQRIEKV  480
SSKTATNNVN NNDAMLANQT QPGSHAPRES TEKTPEKVDK DDLVDEIEDS DTNSPKQLRK  540
RKRNLMEPNS TSHTMEWDDS IDNERREFRV RLPASTSRSK ISPLNLYVEK KFVVRRVRKR  600
WTPQEEDALR EGVKRFGRSW KNILECYRVV FEDRTDIDLK DKWRNMTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1535541KQLRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734347.11e-166uncharacterized protein LOC110701068
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.17e-19TRF-like 5