PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010043-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 524aa    MW: 56519.7 Da    PI: 7.3612
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010043-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.6e-11114170155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a+ k++g
  AHYPO_010043-RA 114 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAAIKYWG 170
                      57*******************4444.2455535555.779999**************98 PP
2AP247.25.5e-15213264155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  AHYPO_010043-RA 213 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 264
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-15114180IPR016177DNA-binding domain
PfamPF008471.5E-8114170IPR001471AP2/ERF domain
CDDcd000182.99E-19114180No hitNo description
Gene3DG3DSA:3.30.730.104.0E-12115179IPR001471AP2/ERF domain
SMARTSM003801.4E-22115184IPR001471AP2/ERF domain
PROSITE profilePS5103217.135115178IPR001471AP2/ERF domain
PRINTSPR003674.4E-6116127IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17213273IPR016177DNA-binding domain
PfamPF008476.8E-10213264IPR001471AP2/ERF domain
CDDcd000182.01E-24213274No hitNo description
Gene3DG3DSA:3.30.730.105.0E-18214272IPR001471AP2/ERF domain
SMARTSM003802.7E-33214278IPR001471AP2/ERF domain
PROSITE profilePS5103219.177214272IPR001471AP2/ERF domain
PRINTSPR003674.4E-6254274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MIKTWLRSNN PSQTNIIDGS GGSGGGGGGS GGGDSVATIS NAQTLSLSMG TSGGTHHSNS  60
ALSLNAASGI SGGSEMESKQ QQQNDTTTAT LDAQSGALES VPRKSIDTFG QRTSIYRGVT  120
RHRWTGRYEA HLWDNSCRRE GQTRKGRQGG YDKEEKAARA YDLAAIKYWG STTTTNFPIS  180
DYTKEIEDMK PMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  240
YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FEINRYDVKA ILDSATLPIG GAAKRLKDVE  300
DHLTPSSDKQ IITPINTHDH SHLSSYANGI PNFHSWPGIA FPQPQQPITM HNYPYANSHQ  360
QRVWCKQEVQ DCNDHDYQNH LNQIQINSGC GTHNFFQMHN LMGLENSSSS MEQSSGSNSL  420
LYGNGNGNGN DGIGGYGFPP GNGMSTVVAE DGNGNGNGNE NYYYYSQGNG SVRGNVGTYD  480
QGSACNNWVP TAIPALGPRT THLAAVGGHE GGGIPTFTVW NDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772295.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLW9RF390.0W9RF39_9ROSA; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_010674006.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-125AP2 family protein