PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010077-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 549aa    MW: 59878.7 Da    PI: 6.8672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010077-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.6e-11261317155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  AHYPO_010077-RA 261 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 317
                      57*******************4444.2344336655.779999**************98 PP
2AP249.79.4e-16360411155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  AHYPO_010077-RA 360 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 411
                      57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-15261327IPR016177DNA-binding domain
PfamPF008476.5E-9261317IPR001471AP2/ERF domain
CDDcd000181.65E-20261327No hitNo description
SMARTSM003801.7E-22262331IPR001471AP2/ERF domain
PROSITE profilePS5103217.649262325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-13262326IPR001471AP2/ERF domain
PRINTSPR003673.9E-6263274IPR001471AP2/ERF domain
CDDcd000185.86E-12360419No hitNo description
PfamPF008474.9E-10360411IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17360420IPR016177DNA-binding domain
SMARTSM003801.6E-31361425IPR001471AP2/ERF domain
PROSITE profilePS5103219.151361419IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18361419IPR001471AP2/ERF domain
PRINTSPR003673.9E-6401421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MAPAAAAGTA SNWLSFSLSP MEMMATSHHH LHHDHHDQTP QILHTPVSNP SSHYFLDPIY  60
TTDWGNQKAN MGMYTDYVVD QHIDNNPPPT MPKLEDFFGG GGGHHHTTSY NSQTETTQDS  120
SSQLTHLYES NHHQNSVPNY YTNTQQQDLK VMTSNLAGFQ AAFSANSGSE VDDSSTTHLS  180
CGGGANGSEF VGHSIESTHH NNELIPSYGS TKSNNNNNNG GSLSLAVVPQ SVEKSVVPVG  240
VGVDSDNSVK KISDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQGGYDK  300
EEKAARAYDL AALKYWGPTA TTNFPISNYS TELEDMKHVT KQEFIASLRR KSSGFSRGAS  360
IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE AYDIAAIKFR GVNAVTNFEM  420
NRYDVDAILK SNLPIGGAAK RLKLAAEAAD QKPTLSLEQQ SHSSNGSSGG TSSTINFAAI  480
QSVPAMPYDT ASAIFHQNLF HQLNSNGGAQ AVASDSYASG VSSIVAPMMS LMPQTPAEFY  540
IWPHHQPY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680360.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-153AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2P5EGR71e-180A0A2P5EGR7_TREOI; AP2/ERF transcription factor
STRINGXP_010680360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-130AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]