PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010169-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 463aa    MW: 51650.8 Da    PI: 8.0973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010169-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32181237360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      DgynWrKYGqK+vkgse+prsY++Ct+++Cp+kkkvers  d++++ei+Y+geHnh+k
  AHYPO_010169-RA 181 DGYNWRKYGQKQVKGSEYPRSYFKCTYPKCPMKKKVERSL-DGQITEIVYKGEHNHPK 237
                      9***************************************.***************85 PP
2WRKY100.78.5e-32381438259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+v+g+++prsYYrCts++C+v+k+ver+ +dp +++ tYeg+Hnhe
  AHYPO_010169-RA 381 GDGFRWRKYGQKVVRGNPYPRSYYRCTSPKCNVRKHVERAIDDPGTFISTYEGKHNHE 438
                      6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-28171238IPR003657WRKY domain
SuperFamilySSF1182902.35E-24179238IPR003657WRKY domain
SMARTSM007742.3E-35179237IPR003657WRKY domain
PfamPF031066.4E-25181236IPR003657WRKY domain
PROSITE profilePS5081122.883181238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-31369439IPR003657WRKY domain
SuperFamilySSF1182903.14E-27375439IPR003657WRKY domain
PROSITE profilePS5081132.374375440IPR003657WRKY domain
SMARTSM007742.4E-36380439IPR003657WRKY domain
PfamPF031069.4E-25382438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEVKEIDRVI ISKPVASRPN CTGFRLELLA GPINDSLPPE TAAAAIRPKT VRPTINQAKP  60
TSEIQLDTSE AAFDFSSTSI SRVHNQSTIF KPLAKSVSKA TISLLANLSS SGISHQQALS  120
QFGVSAKLDK LQIFSNQHSN NVSFVELSQS VEPPTIAPQM LDEELRMMAS STARINKRSC  180
DGYNWRKYGQ KQVKGSEYPR SYFKCTYPKC PMKKKVERSL DGQITEIVYK GEHNHPKPDH  240
AKRNVSQVQE SAIAGTDQDH SISDPKRDNL CDETEGFERQ MENENSLMTS KQALFPANYV  300
PLFYNSVDTE ECNAGDRTIV DPAGIGRGCE EADQPTKVDD NGTKNKRRKQ DKQNNETGKS  360
GEGVIEPCIL VHNNSEPEIM GDGFRWRKYG QKVVRGNPYP RSYYRCTSPK CNVRKHVERA  420
IDDPGTFIST YEGKHNHEMS MKITNDSTTE PETQGPTIKD KQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-30181439877Probable WRKY transcription factor 4
2lex_A6e-30181439877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021762468.10.0WRKY transcription factor 44-like
RefseqXP_021762469.10.0WRKY transcription factor 44-like
TrEMBLA0A0K9RBL00.0A0A0K9RBL0_SPIOL; Uncharacterized protein
STRINGXP_010682970.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-81WRKY family protein