PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010179-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 162aa MW: 18315.6 Da PI: 5.0366

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010179-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	27	74	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P++ +K K++iL ++Y++sLq AHYPO_010179-RA 27 SHSLAERVRRQRISDKMKVLQSLVPEC-----EKmTGKVQILDNIINYVHSLQ 74 8***********************9.....5669**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.33E-16	21	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.916	23	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	26	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-9	27	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.46E-10	27	78	No hit	No description
SMART	SM00353	3.8E-10	29	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MTVHDEGGRR DDEYVYLRAK RGQTINSHSL AERVRRQRIS DKMKVLQSLV PECEKMTGKV 60 QILDNIINYV HSLQDHVKTL MEELALVDPT FNFNYLTERP VAIQTEESLA TSADSECSKI 120 ASQSYAGGYD QSICLHESSN AYMSAPLSPW LALLEDREYT I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682661.1	6e-58	PREDICTED: transcription factor BEE 2
Swissprot	Q9C670	3e-27	BH076_ARATH; Transcription factor bHLH76
TrEMBL	I6MJ73	1e-39	I6MJ73_BETVU; Putative cryptochrome-interacting basic helix-loop-helix 5 (Fragment)
STRING	XP_010682661.1	2e-57	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	7e-30	cryptochrome-interacting basic-helix-loop-helix 5

Link Out ? help Back to Top
Phytozome	AHYPO_010179-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]