PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010277-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WRKY

Protein Properties

Length: 285aa MW: 31110.7 Da PI: 6.7858

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010277-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	79	137	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gCp++k+vers+ dp++++itY eHnh+ AHYPO_010277-RA 79 SDSWAWRKYGQKPIKGSPYPRGYYRCSTSkGCPARKQVERSRVDPTMLIITYACEHNHP 137 69**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-32	70	139	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-26	73	139	IPR003657	WRKY domain
PROSITE profile	PS50811	32.707	73	139	IPR003657	WRKY domain
SMART	SM00774	4.6E-36	78	138	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	80	137	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MVMKNKLQKS IITSEQDNNP QSSSDHGPDS PISAHFSTPT TAIIASSNKS RRGIQKRVVS 60 VPIPDADGSR SKTESYPPSD SWAWRKYGQK PIKGSPYPRG YYRCSTSKGC PARKQVERSR 120 VDPTMLIITY ACEHNHPLPT TKHHHHNNHQ FSETAASATE NSASPSSPSC IADGGEEASP 180 SSPSHVSLFG IGDPPELEFV RDSLTLGNLG VEFNWISDLS FGTPALVQPE SEDIEVSTLS 240 MKEEDKLLFG DLGELPECSL VFRHRHGNIE RCTNSTPICG RLIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-22	56	140	6	80	Disease resistance protein RRS1
5w3x_D	4e-22	56	140	6	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689722.1	1e-124	PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBL	A0A0J8BLH3	1e-122	A0A0J8BLH3_BETVU; Uncharacterized protein
STRING	XP_010689722.1	1e-123	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	6e-62	WRKY DNA-binding protein 69

Link Out ? help Back to Top
Phytozome	AHYPO_010277-RA