PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010313-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 192aa    MW: 21403.6 Da    PI: 5.036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010313-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-191767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t e+Aa a++ a+  l+g
  AHYPO_010313-RA 17 STYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTQEMAAIAYDVAAFHLRG 67
                     56*****999.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-231776IPR016177DNA-binding domain
CDDcd000187.42E-331777No hitNo description
PROSITE profilePS5103223.4061875IPR001471AP2/ERF domain
PfamPF008471.2E-121867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-321876IPR001471AP2/ERF domain
SMARTSM003802.0E-381881IPR001471AP2/ERF domain
PRINTSPR003674.4E-101930IPR001471AP2/ERF domain
PRINTSPR003674.4E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEDNVNSYGR SRGGISSTYR GVRKRKWGKW VSEIREPGKK TRIWLGSFDT QEMAAIAYDV  60
AAFHLRGRGA HLNFPELADE LPCPASSGAE DIRRTAQEAA ITLHPRMTSH PNSMQSGPTD  120
VTTQPSYSSS SSPTRVGLSP WQIQAINESP LESPQMWSSM TDNMMLDDPF IYSSNDTTWE  180
DGEVHYDSLW D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-181975360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-171975663ATERF1
3gcc_A1e-171975663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683050.19e-90PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-47ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0K9RAT42e-85A0A0K9RAT4_SPIOL; Uncharacterized protein
STRINGXP_010683050.13e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-48ERF family protein