PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010316-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25438 Da    PI: 8.4786
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010316-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.8e-24244951
                     HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr+g+lKKA+EL +LCdaev viifsst klyeyss
  AHYPO_010316-RA  2 RQVTFSKRRKGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSS 44
                     9****************************************96 PP
2K-box77.43.7e-2660154598
            K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++ + ++e++ + ++qe++  +++++ L +++R+l+G++L+ L+++eLq+Le+qLe sl+ iR+kK+++l+++i+el +k +++q+en++L +k
  AHYPO_010316-RA  60 EQHHlNSESELKFWRQEAEITRQQLQDLHESHRQLMGQKLSGLNIEELQSLEDQLEISLRGIRTKKEQILTDEIQELNHKGNMIQQENMELCEK 153
                      333368999**********************************************************************************998 PP

            K-box  98 l 98 
                      +
  AHYPO_010316-RA 154 V 154
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.787146IPR002100Transcription factor, MADS-box
PfamPF003195.0E-22142IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-26175IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-20145IPR002100Transcription factor, MADS-box
CDDcd002651.38E-31162No hitNo description
PRINTSPR004041.4E-15823IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-152344IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2466154IPR002487Transcription factor, K-box
PROSITE profilePS5129714.50670160IPR002487Transcription factor, K-box
Gene3DG3DSA:2.170.130.102.3E-478165IPR012910TonB-dependent receptor, plug domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004872Molecular Functionreceptor activity
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
SRQVTFSKRR KGLLKKAKEL AILCDAEVGV IIFSSTSKLY EYSSSSMKSV TDRYKKAKQE  60
QHHLNSESEL KFWRQEAEIT RQQLQDLHES HRQLMGQKLS GLNIEELQSL EDQLEISLRG  120
IRTKKEQILT DEIQELNHKG NMIQQENMEL CEKVNIIRQA NIDLYKKLCN LGNMNDSISN  180
GSLIPTNGFS SSEDPQELIH LRLSHLGRPR NLTPLGAAPA LGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-151701684MEF2C
5f28_B2e-151701684MEF2C
5f28_C2e-151701684MEF2C
5f28_D2e-151701684MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837973.11e-123MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP494e-79MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4D2W92e-85A0A1S4D2W9_TOBAC; MADS-box transcription factor 23-like isoform X4
STRINGXP_010683047.11e-117(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-64AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]