PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010395-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 261aa    MW: 29682.5 Da    PI: 7.0962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010395-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.3e-07161208355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +a +++ r RR++i+++ +eL +++P        Kl+ a++ e A +Y+k +q
  AHYPO_010395-RA 161 KAQSKAARVRRRKIKEKTNELGKIIPGV-----SKLNTAQMFEAASKYVKFMQ 208
                      6778899********************5.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-10157221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.176158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-7158212No hitNo description
Gene3DG3DSA:4.10.280.101.6E-9158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSINYENPNY FLDQIPSFQP QDLQFQNPNE ILNPIPNSDF FCFDPLLHLY GLDPLYIPPP  60
LDFDPDNHNH DDGSLPNNPP SGSAYPTQTI NFPQKQRVKA INPCFGSDLN FNGDLAIKEK  120
VNSNYYNFNH NNCNNVDNYG LLDEGFGENS SIVRVNDKRT KAQSKAARVR RRKIKEKTNE  180
LGKIIPGVSK LNTAQMFEAA SKYVKFMQTQ LEILRSYKNL HQLYANGKCL VPLELVPMLE  240
QQCDSKIKPS ISMHIKDLNT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855908.14e-51transcription factor bHLH52-like
TrEMBLA0A0K9Q8H82e-48A0A0K9Q8H8_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-16bHLH family protein