PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010416-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 247aa    MW: 27415.2 Da    PI: 6.092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010416-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-1874124256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a+++++g+
  AHYPO_010416-RA  74 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATADMAARAHDVAALAIKGH 124
                      69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1274124IPR001471AP2/ERF domain
SMARTSM003804.3E-3474137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3174132IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2174131IPR016177DNA-binding domain
PROSITE profilePS5103222.64274131IPR001471AP2/ERF domain
CDDcd000181.40E-3175132No hitNo description
PRINTSPR003672.9E-107586IPR001471AP2/ERF domain
PRINTSPR003672.9E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEENSLITSY CNHQTIYSSS TSTSLSTSAS DTNNSDSTIL TTSKNYAKRL KEDKICNESR  60
KKKSKGNFEG KHPTYRGVRM RNWGKWVSEI REPRKKSRIW LGTFATADMA ARAHDVAALA  120
IKGHNAFLNF PEIAHLLPKP TSTTPKDIQA AAIKAAIEFP SSQAEPSNQA DSPITTATSS  180
SSNYDTSSSA SSSNFDDNIF FNLPDLFLDL ENVIQFGHSL HWQLPEAEEP ANDHDEPADY  240
PFIWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17711311172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021757817.11e-109ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9RD518e-97A0A0K9RD51_SPIOL; Uncharacterized protein
STRINGXP_010677077.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]