PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010432-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 343aa    MW: 38292.4 Da    PI: 6.3885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010432-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20180231256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg++ ta eAa+a+++a+ kl+g+
  AHYPO_010432-RA 180 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTYETAIEAARAYDRAAFKLRGA 231
                      7********.**********96655..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-32179239IPR001471AP2/ERF domain
PfamPF008476.1E-14180230IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23180240IPR016177DNA-binding domain
SMARTSM003807.3E-35180244IPR001471AP2/ERF domain
PROSITE profilePS5103224.645180238IPR001471AP2/ERF domain
PRINTSPR003672.5E-13181192IPR001471AP2/ERF domain
CDDcd000185.75E-25188238No hitNo description
PRINTSPR003672.5E-13220240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALPNDSLAL EFIKNHLFSE LSPIGSNFSF NFSFNNGNNI NINNFNVNNH ESDITLTKSN  60
SLCSQSSIDS SSTSFSFGGQ QKQQQSSALI KEEQNFDFDF DFDLDFSKFE PKTKEDDNQM  120
TSSPTFSSGS KSKFSERKPS MKIAVPAQTK KFEVVEFVPE STQQVNTEST QRVEEETRRH  180
YRGVRRRPWG KYAAEIRDPN KRGSRVWLGT YETAIEAARA YDRAAFKLRG AKAILNFPLE  240
IAKTVEMSEV NTTASSGSVD SGNRKRKAVE DKVEVVEVKK EKVEHSTNTV SYGFEELGPL  300
TPSNWTAFWD LDVKSGNGVF TIPPLSPLSP HPSIGYSQLA VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-30179241163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768012.11e-109ethylene-responsive transcription factor ERF104-like
TrEMBLA0A0K9RZH71e-96A0A0K9RZH7_SPIOL; Uncharacterized protein
STRINGXP_010677102.16e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-35ethylene responsive element binding factor 5