PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010439-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 540aa    MW: 60343.3 Da    PI: 6.3999
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010439-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.51.2e-173163541756
          G2-like  17 aveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      aveqL G ++A+P++ilelmkv+gLt+++++SHLQkYR++
  AHYPO_010439-RA 316 AVEQL-GVDQAIPSRILELMKVEGLTRHNIASHLQKYRMH 354
                      9****.********************************96 PP
2Response_reg25.47.3e-10201231109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      +l+ d++++ ++ +++ le+ ++ +v ++++ +eal  +  k+  +++ ++ ++  g ++ le +k       +lp i+++ +   +++ +++ 
  AHYPO_010439-RA  20 ILLLDEDRNSASEIKSKLEEMEF-IVIAFSSEHEALSAISSKNeiFHVAIIKVNCDGrCNFLECAK-------DLPTIMISKEHCLNTMMKCIA 105
                      7999*******************.***************888889*********999778888776.......5688***************** PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                      +Ga +fl++p+++++l++
  AHYPO_010439-RA 106 LGAVEFLVEPISEDKLRN 123
                      ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.9E-1216134No hitNo description
SuperFamilySSF521722.28E-1316136IPR011006CheY-like superfamily
PROSITE profilePS5011017.67919129IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-520124IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.66E-821128No hitNo description
Gene3DG3DSA:1.10.10.609.0E-17315357IPR009057Homeodomain-like
SuperFamilySSF466892.87E-9315357IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-16316354IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVCTANDLLE WKDFPKGLRI LLLDEDRNSA SEIKSKLEEM EFIVIAFSSE HEALSAISSK  60
NEIFHVAIIK VNCDGRCNFL ECAKDLPTIM ISKEHCLNTM MKCIALGAVE FLVEPISEDK  120
LRNIWQHVVH KAFNTSGSRE SESLKSVKEF VGSILEMQQQ NVSIQTHVSE ESMIDTVVDE  180
VNHDQSAAGD KFPAPSTPQI KHAGRSLDDG DYHDQTNNSP VKEGIEFDGE IKSVDNTNDG  240
NSFAEMEVDP PQPTSVGATK EEVDCRDDSK GTDGIPKHCG NNEESNKKSS KNACGVKNSR  300
KRMKVIIEQL SDGFCAVEQL GVDQAIPSRI LELMKVEGLT RHNIASHLQK YRMHRRHILP  360
KQDERRWPQP RHSIPRNYYP HHRPVMAYPP YQTNHAFTSG QVYPAWSQQA GYHPHGFPMW  420
GSPSYPWQPY PPMHADAWGC PVMPPPPCPT SPFPNVSFVF PFVKVQGAYG FHSPDTYKKN  480
SADMNPGEEV IDKVVKEAIS KPWLPLPIGL KPPSIDSVLA ELSRQGISTI PPPNGHRPC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677297.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
RefseqXP_010677298.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
RefseqXP_019105079.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
TrEMBLA0A0K9RR190.0A0A0K9RR19_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RSM00.0A0A0K9RSM0_SPIOL; Uncharacterized protein
STRINGXP_010677297.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-110ARR-B family protein