PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010468-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

SBP

Protein Properties

Length: 987aa MW: 109530 Da PI: 6.595

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010468-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.8	3.6e-39	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh+l+efD++krsCrrrLa+hn+rrrk++a AHYPO_010468-RA 152 VCQVEGCRVDLSCGKDYHRRHKVCEVHSKASEALVGNTMQRFCQQCSRFHALQEFDDGKRSCRRRLAGHNKRRRKAHA 229 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-31	145	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.941	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.1E-36	151	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-28	153	226	IPR004333	Transcription factor, SBP-box
CDD	cd00204	9.71E-10	737	879	No hit	No description
SMART	SM00248	27	763	793	IPR002110	Ankyrin repeat
Gene3D	G3DSA:1.25.40.20	5.3E-12	763	880	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.17E-10	764	882	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.65	820	850	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	9.861	820	880	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.763	820	843	IPR002110	Ankyrin repeat
SMART	SM00248	3000	860	888	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MEAKFGGKSN GYGPVVAEMK AVGKRTLEWD LNDWKWDGDL FLASPLNPVA SDCRSRQLFP 60 LGPESVANTN ANVSNGLPFD FEEITMTNEN GKREIEKRRR VVEVHGEELH DQVGPLDLKL 120 GEQVYPIVEG EVDRMEGKSV KKSKSAGSSQ PVCQVEGCRV DLSCGKDYHR RHKVCEVHSK 180 ASEALVGNTM QRFCQQCSRF HALQEFDDGK RSCRRRLAGH NKRRRKAHAE TSPNGSSLVD 240 ERSAGYLLIS LLRILSNLHS NASNDSKDQD LISHLLRNLA DQVNGSNMSE LHRASQSLLN 300 AGTSVGMPEK VSSRSQESSE AIPSADAQIG LLIRENQHDT RQTQPAARPD VLRPPSGSIP 360 AKGIVQAADL NKHSFSGIDL NCVYTDLPER YENPEKGHSS VACVLGPEQH LLKLSPPQTS 420 GYSDSNSGRS SSSGSETQGR TDRIVFKLFG KDPNDLPHLL RTQILDWLSH SPSDIEGYIR 480 PGCIVLTIYL RLNKALWEEL CYDMSSSFSR LLSLSDDPFW KTGWIYTRVQ QRAAFICDGH 540 VVLDTPLPFK SRQSRILSIS PIAVPAAETV QFVIKGSNLS GPSSRLLCAI EGKYLVEESS 600 ALAEDTDTAA EQDEFQPLGF CISIPNVVGR GFVEVEDYGL NGCFFPFIVA DPEICSEICM 660 LESVMEFVGT EEGTDGECST LKARNDALDF IHEMGWLLHR TNLSLRLGQT DPRSDLFPFD 720 RLKWLIVFSM DHDWCAVLRK LLDILYSGIV NTTDHASVEY ALSEMTLLHT AVQRNKRAMV 780 EFLLRYTPQK VRNTSGMEQK HPDNGTPGSF LFRPDVAGSN GLTPLHIAAS CAGFDNVLDA 840 LLEDPGKVGI RAWENAQDGT GLTPKDYACL RGHTQYINLF RRKINKYSSG KHVVIDIYGF 900 SDLESNRKQS DKVQNAKLNT LYTENCKLCE EKVDYGFRGA ALTYRPAILS LVTIAVVCVC 960 TALLFKSMPR VCFGPFRWDS LKYGAM*

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MEAKFGGKSN GYGPVVAEMK AVGKRTLEWD LNDWKWDGDL FLASPLNPVA SDCRSRQLFP  60
LGPESVANTN ANVSNGLPFD FEEITMTNEN GKREIEKRRR VVEVHGEELH DQVGPLDLKL  120
GEQVYPIVEG EVDRMEGKSV KKSKSAGSSQ PVCQVEGCRV DLSCGKDYHR RHKVCEVHSK  180
ASEALVGNTM QRFCQQCSRF HALQEFDDGK RSCRRRLAGH NKRRRKAHAE TSPNGSSLVD  240
ERSAGYLLIS LLRILSNLHS NASNDSKDQD LISHLLRNLA DQVNGSNMSE LHRASQSLLN  300
AGTSVGMPEK VSSRSQESSE AIPSADAQIG LLIRENQHDT RQTQPAARPD VLRPPSGSIP  360
AKGIVQAADL NKHSFSGIDL NCVYTDLPER YENPEKGHSS VACVLGPEQH LLKLSPPQTS  420
GYSDSNSGRS SSSGSETQGR TDRIVFKLFG KDPNDLPHLL RTQILDWLSH SPSDIEGYIR  480
PGCIVLTIYL RLNKALWEEL CYDMSSSFSR LLSLSDDPFW KTGWIYTRVQ QRAAFICDGH  540
VVLDTPLPFK SRQSRILSIS PIAVPAAETV QFVIKGSNLS GPSSRLLCAI EGKYLVEESS  600
ALAEDTDTAA EQDEFQPLGF CISIPNVVGR GFVEVEDYGL NGCFFPFIVA DPEICSEICM  660
LESVMEFVGT EEGTDGECST LKARNDALDF IHEMGWLLHR TNLSLRLGQT DPRSDLFPFD  720
RLKWLIVFSM DHDWCAVLRK LLDILYSGIV NTTDHASVEY ALSEMTLLHT AVQRNKRAMV  780
EFLLRYTPQK VRNTSGMEQK HPDNGTPGSF LFRPDVAGSN GLTPLHIAAS CAGFDNVLDA  840
LLEDPGKVGI RAWENAQDGT GLTPKDYACL RGHTQYINLF RRKINKYSSG KHVVIDIYGF  900
SDLESNRKQS DKVQNAKLNT LYTENCKLCE EKVDYGFRGA ALTYRPAILS LVTIAVVCVC  960
TALLFKSMPR VCFGPFRWDS LKYGAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-29	145	226	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672614.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Refseq	XP_010672615.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A0J8CTR7	0.0	A0A0J8CTR7_BETVU; Uncharacterized protein
STRING	XP_010672614.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	AHYPO_010468-RA