PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010500-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 351aa    MW: 38905.2 Da    PI: 4.4739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010500-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.54.8e-182170151
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51
                     l+pGfrFhPtd+elv +yLk+k+ gk++++ ++i+e+diyk+ePwdLp ++
  AHYPO_010500-RA 21 LAPGFRFHPTDQELVGYYLKRKICGKSIRF-DAISETDIYKSEPWDLPVCF 70
                     579**************************9.99**************9643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-171768IPR003441NAC domain
PROSITE profilePS5100515.81521174IPR003441NAC domain
PfamPF023653.2E-82377IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGTEPPPPPP PPPTPATATS LAPGFRFHPT DQELVGYYLK RKICGKSIRF DAISETDIYK  60
SEPWDLPVCF QLALDSFLRL FESWMLMERY YSSCVFPACF GFFLASVRVL DAHGTLLLQL  120
DAYLLCKILK KSGPGFKPGE QYGPFVEEEW EKDSSTLVPG EEGDDEALCN DDTRVEESTH  180
SMNNESAAVT SCGLSTEVQN MPPLCKIERA EGCAVDPEAL SLGLNKRFKP NDADTCHSNV  240
SEISTTITQG PCSSSTGNTK FSCRLLDFPL LESVEPKESP SPPLANAIDI NVPPSYLKLF  300
EDLRNEIYRT SIEKESLKIE VMSARTMINI LQTKVDHLTK ENEDLKKSDL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021722878.11e-159NAC domain-containing protein 2-like
TrEMBLA0A0K9R5V81e-150A0A0K9R5V8_SPIOL; Uncharacterized protein
STRINGXP_010694507.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-32NAC domain containing protein 2