PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010580-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 259aa    MW: 29297 Da    PI: 9.9449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010580-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-193181155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +g+WvAeI+  s   ++ r++lg+f+taeeAa+a+++a+  l+g
  AHYPO_010580-RA 31 SKFVGVRQRP-SGKWVAEIKNTS---QKIRIWLGTFDTAEEAARAYDEAACLLRG 81
                     79********.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-333188No hitNo description
PfamPF008472.2E-143181IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-203189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-283289IPR001471AP2/ERF domain
PROSITE profilePS5103219.5333289IPR001471AP2/ERF domain
SMARTSM003805.4E-373295IPR001471AP2/ERF domain
PRINTSPR003671.5E-83344IPR001471AP2/ERF domain
PRINTSPR003671.5E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEFQFQQITH SNSEFKVKSR SRKGTKSNAK SKFVGVRQRP SGKWVAEIKN TSQKIRIWLG  60
TFDTAEEAAR AYDEAACLLR GSNTRTNFIT SDNTNSALSR RIRNLVNQKK RLINSPQFGP  120
TLPTTSSADN VADSSVVINQ TVNFTSQMVN GNEYRPDMTR QFDYSWAFPQ QFPPPIPVDL  180
GVFTKTLPEA QLVNNNANEV AMLEFERIKV ERQISASLYA MNGVNDYLQS VFRTRDSSDL  240
PMTLAWDPPM FYHNFCLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1531981381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714920.11e-114ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0K9RTC52e-97A0A0K9RTC5_SPIOL; Uncharacterized protein
STRINGXP_010673981.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-36related to AP2 11