PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010626-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 206aa    MW: 23472.5 Da    PI: 6.3654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010626-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-142675355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +g+Wv+e+r+p   +k+ r++l+++ tae Aa+a++ a++ l+g
  AHYPO_010626-RA 26 FHGVREKSDSGKWVCEVREP---NKKSRIWLETYPTAELAARAHDVAALTLRG 75
                     78**************9998...347************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-212589IPR001471AP2/ERF domain
PROSITE profilePS5103219.7572583IPR001471AP2/ERF domain
CDDcd000182.08E-242585No hitNo description
SuperFamilySSF541715.43E-162685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-252685IPR001471AP2/ERF domain
PfamPF008474.2E-102675IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYVVSTSPAP KRTGRKKFKE TRHLIFHGVR EKSDSGKWVC EVREPNKKSR IWLETYPTAE  60
LAARAHDVAA LTLRGDKATL NFPDSAWLVP RAKSISAQDI RLAALQATRS DLQSSSPSCQ  120
NDHKSEILDE SSPNYEGKNL EEGVENKYKE LLYFDEEAIF NMPTFIDSMA IGMLLTPPSL  180
KRGYNWNHEM DEDVTIFYLD MNLWQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754496.11e-88LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A0K9QEG97e-80A0A0K9QEG9_SPIOL; Uncharacterized protein
STRINGXP_010686195.17e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.14e-53C-repeat/DRE binding factor 1