PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010635-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 947aa    MW: 106654 Da    PI: 7.3121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010635-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07129149425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      + Cr+fa  G C++G++C+F H
  AHYPO_010635-RA 129 RVCRDFAV-GRCRRGSSCHFLH 149
                      57******.************* PP
2zf-CCCH23.21.2e-07199218525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C++f++ G C++Gd+C+F H
  AHYPO_010635-RA 199 ICNDFLK-GRCRRGDSCRFVH 218
                      6******.************* PP
3zf-CCCH21.25e-07297316525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       C+ffa+ G C+ G rCkF+H
  AHYPO_010635-RA 297 TCKFFAA-GNCRNGTRCKFSH 316
                      7**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.652125152IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6129152IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5129149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5194219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756194221IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5199219IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5199218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239292319IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5292318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6293317IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4297316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4298318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MSGSSKRRHS KWDLKDSVAL PANFNDGAQP RRPRESYSPG LHSSRLDSRC KGSSMTLDRQ  60
EKSPRMSSEL DEWRPRHSSR SPRNGWSQSR RNSKSRSRSR SRSRSPAHNS RREPTVTDWS  120
RSRTGASARV CRDFAVGRCR RGSSCHFLHE DSQLYDRRRP LESSPSEDLE SSRRRVGSSK  180
YSPDDSKDNT RRTEKSAHIC NDFLKGRCRR GDSCRFVHQD TAVGVFEKGL IEDVYRNKDR  240
DRRSRDIYPD QNHRSRDPYT DNGHRSKDPY PDHEHRRRDP YLERKHEFEP PRRGENTCKF  300
FAAGNCRNGT RCKFSHQVQN SFSPEKRSRD VRRDTNREDS LGWDGPKWSN ATAMSAVPEM  360
QCWEEDKKEN EELNTVRIHG DGRSSGHKYE GDRDWNGPTW KDATTMPAIT GVQGWGEDKN  420
EITEMSKDVT RTRPGDGPTW NGPDHKYEGD RDWNDSTWTD ATTMPAITGV QGWGEDKNEI  480
TEVSTDTTRT RPGDDSCSHD ILTVKPAWDT PASIDQSEIQ DDEEPLKWKT EHNVPGIEIL  540
SGDIEISPTV INQQNVNSST SQIPSITNIS FPVVQQESAE EASFEKHYSA DFLEPKVCSD  600
PFIEQTSSIK DNKHTLISGE RRNVFGDRDG PVITQNQSAH VLQGQSIFQP SIADAHPISN  660
INPQGQNQLP VDSHPQVSHN PPSFLDNKVA ESHDIGSASS ALAPASATEA QLAELSHLTA  720
SLTQLLENRQ QLSQLSSAVT NLPNLSGPVP AVAGVMIQRN HVPEVLKQYD PVCNTIEPKM  780
PNMGNQLLPS VEQKSSVDEL HHHANNEIHH HKSGNVNQQE HLASTKDEEN GKKSAVGGIK  840
APENKPSHDA GADDDDGKKM NDTKGIRSFK FALVEMVKEL LKPSWKDGQV SKDDYKTIVK  900
KAVDKVTETL GPQIPQTKDK IDLYLSCSKQ KIDKLVQAYV EKYHKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680246.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010680247.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010680248.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLA0A0K9RSN70.0A0A0K9RSN7_SPIOL; Uncharacterized protein
STRINGXP_010680246.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein