PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010646-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 214aa MW: 25007.1 Da PI: 6.2229

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010646-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.1	9.3e-29	17	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.d.iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gkdke 91 lppGfrF+P+deelv ++L+ kv++++ + i+e+ + ++++P++L+ ++ ++ +wyf++k+ +nr+ ++gyWk+ d++ AHYPO_010646-RA 17 LPPGFRFDPSDEELVIDFLHSKVSSSSPNSLCLIPELeGfYHHYHPSQLHGEALESCGQWYFYTKKT--------ENRVNENGYWKELmDMDQP 102 79***********************88878895423456**965555667*9974........489999*751569 PP NAM 92 vlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++++ +++lvg kk Lvfy+g +g+kt W+m+e+++ AHYPO_010646-RA 103 IFARnSNKLVGWKKCLVFYRGtFPLTGTKTGWFMQEFHA 141 9966777*******9445589********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-33	9	170	IPR003441	NAC domain
PROSITE profile	PS51005	32.902	17	172	IPR003441	NAC domain
Pfam	PF02365	3.5E-20	18	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MMENNSNIKH LVNMKHLPPG FRFDPSDEEL VIDFLHSKVS SSSPNSLCLI PELEGFYHHY 60 HPSQLHGEAL ESCGQWYFYT KKTENRVNEN GYWKELMDMD QPIFARNSNK LVGWKKCLVF 120 YRGTFPLTGT KTGWFMQEFH ACSPNFGAQL HHKRRSKRPD AKKWVVCRVQ QICDESHWMN 180 TSSYEEEVEL SSSDELYYLA MDDDQDDIIS CLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-20	17	169	17	162	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-20	17	169	17	162	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-20	17	169	17	162	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-20	17	169	17	162	NO APICAL MERISTEM PROTEIN
3swm_A	4e-20	17	169	20	165	NAC domain-containing protein 19
3swm_B	4e-20	17	169	20	165	NAC domain-containing protein 19
3swm_C	4e-20	17	169	20	165	NAC domain-containing protein 19
3swm_D	4e-20	17	169	20	165	NAC domain-containing protein 19
3swp_A	4e-20	17	169	20	165	NAC domain-containing protein 19
3swp_B	4e-20	17	169	20	165	NAC domain-containing protein 19
3swp_C	4e-20	17	169	20	165	NAC domain-containing protein 19
3swp_D	4e-20	17	169	20	165	NAC domain-containing protein 19
4dul_A	4e-20	17	169	17	162	NAC domain-containing protein 19
4dul_B	4e-20	17	169	17	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680223.1	7e-92	PREDICTED: NAC domain-containing protein 104-like
TrEMBL	A0A1B1SHU0	8e-82	A0A1B1SHU0_9CARY; NAC3
STRING	XP_010680223.1	3e-91	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-35	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	AHYPO_010646-RA