PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010689-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-X1
Protein Properties Length: 1162aa    MW: 125662 Da    PI: 8.1201
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010689-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.62.3e-07351369119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C ++CH GpC pC+
  AHYPO_010689-RA 351 CGRHRCDEICHVGPCEPCQ 369
                      ******************7 PP
2zf-NF-X117.96.6e-06415432118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H C ++CH+GpC++C
  AHYPO_010689-RA 415 CGNHDCVEICHPGPCGEC 432
                      ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.34E-7174244No hitNo description
PROSITE profilePS500168.716181242IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590184239IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.435184240IPR001841Zinc finger, RING-type
CDDcd060081.24E-5273334No hitNo description
SMARTSM004380.23296314IPR000967Zinc finger, NF-X1-type
PfamPF0142233298313IPR000967Zinc finger, NF-X1-type
CDDcd060086.63E-13341389No hitNo description
PfamPF014221.2E-5351368IPR000967Zinc finger, NF-X1-type
SMARTSM004382.8E-4351370IPR000967Zinc finger, NF-X1-type
CDDcd060083.23E-9405450No hitNo description
PfamPF014220.0017415432IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013415434IPR000967Zinc finger, NF-X1-type
CDDcd060082.81E-4463511No hitNo description
PfamPF014229.2473491IPR000967Zinc finger, NF-X1-type
SMARTSM0043812473492IPR000967Zinc finger, NF-X1-type
PfamPF0142219531542IPR000967Zinc finger, NF-X1-type
CDDcd060086.42E-8559602No hitNo description
PfamPF014220.16569586IPR000967Zinc finger, NF-X1-type
SMARTSM004381.6569588IPR000967Zinc finger, NF-X1-type
CDDcd060085.15E-6616664No hitNo description
PfamPF014228.4626643IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017626644IPR000967Zinc finger, NF-X1-type
PfamPF014220.035679694IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2679710IPR000967Zinc finger, NF-X1-type
PfamPF014221.4712738IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1719740IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MTFQAQNDRR DRSSFSGQSG RQQWVARSPG ILSSQPSRFN ENPDGYAGDG NSRPGQIDGR  60
WGRGFRRGGN GVIIGRSQPL SYNENPDVIV GDMNGRPGQI DGRGDRVFRG GVSGVSGRGG  120
RSYMGRPEHL RRDRNKMKEG FRERNVNRDR SNDQRKGGGK DGDSDLPQLV QEIQDKLHKG  180
AVECMICYDM VRRTAPIWSC SSCYSIFHLN CIKKWARAPS SVDTSAEKSQ GFNWRCPGCQ  240
AVQLTISKDI RYVCFCGKSH DPLSDSYLTP HSCGEPCGKP LERDVLKPGL SKEDMCPHVC  300
VLQCHPGPCS PCKAFAPPRP CPCGKEVITT RCSERKSVHT CGQVCDKVLE CGRHRCDEIC  360
HVGPCEPCQI PMDASCFCKK KSETVICGDM SLKGEITPEN GVFSCNSSCG KKLRCGNHDC  420
VEICHPGPCG ECELLPSKVK TCYCGKTNIT DKRRSCLDPI PTCSGTCGKL LPCGKHYCKD  480
KCHSESCSCC SELVTQKCRC GSTSRTVECY KTTLASEAFV CDRPCGRKKN CGRHRCSERC  540
CPLSDSSNTI SGEWNPHFCS MPCGKKLKCG QHSCEAFCHC GHCPPCMETI FTDLTCACGR  600
SSIPPPLPCG TPPPLCQYPC SVPQPCGHQS THTCHFGDCP PCSVPIAKEC IGGHVVLRNI  660
PCGSKNITCN KLCGKTRRCG LHACARSCHP SSCDAPSGPS DPAAKGSCGQ VCGAPRRDCR  720
HTCQALCHPS APCPDLRCES PVTISCSCGR ITATVPCDAG GSISSAFNAS NIYEASIMQK  780
LPAPLQPVEA SEKRVPVGQR KLTCDDECLK LEKKRILADA FDISQPNLDA IHFGEKPAVS  840
QVLSELLRRD PKWVLAVEDR CKHLVLGKSK GGSSNIKVHV FCPMIKEKQD AIRFIADRWK  900
LTISAAGREP KRFIVVHATA KSKAPPRILG PKGSAAVAAQ HPPVFDPHVD MDPRLVVALL  960
DLPSDADIST LVLRFGGECE LVWLNDKNAL AIFGEAARAA TAMRRLDNGS VYQGAAVVQQ  1020
NGAGASAPSV WGGTAASALR NNPWKKAVVK DANSWVEDSW GAEEWTNGNV SADMGLTSSW  1080
KKPEAPATTT TTNRWTILNS GSFSSSTESS VRPVDNSQRT VAAESSSGTG SEIKTTNTVT  1140
VQLMGLPDDS EVVDDWETAF E*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844229.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0K9RRP50.0A0A0K9RRP5_SPIOL; Uncharacterized protein
STRINGXP_010693736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1