PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010722-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 583aa    MW: 63003.9 Da    PI: 6.8348
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010722-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.4e-25218261144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  AHYPO_010722-RA 218 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 261
                      79***************************************998 PP
2QLQ60.54.7e-21148184137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT+aQ+ +L++Q+++yKyL an PvP++Ll +i+k
  AHYPO_010722-RA 148 GPFTPAQWIELEHQAMIYKYLTANIPVPANLLIPIRK 184
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.4E-12148184IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-15149183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.174149184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954218262IPR014977WRC domain
PfamPF088793.9E-21219261IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEFGLVGVEG LVVGQNGSSS CSEQPQILEG KPKCNNGSGL IKQERSDPFS DEENRTSKMV  60
KRAEDFGFRS DDDLPKQQML SFSLNKPQVN YLTAKDVGLI ADKNAQNLVL SYYQQNPSST  120
VTYTRNYTGF NSGNLNGSMH GSFTGIRGPF TPAQWIELEH QAMIYKYLTA NIPVPANLLI  180
PIRKALSSSG FPGFSIGSYS AHSYGWGPFH LGYSGSTDPE PGRCRRTDGK KWRCSRDAVP  240
DQKYCERHIN RGRHRSRKPV EGLTGQAASG PTSTKVVPAM SASMSSLVTS NGGASNSVTI  300
AHQHQIKGLQ PTGATNASAD SINRFHDEQG ILNLKTNDSQ FSVTKQHVPL DESSHSEFGL  360
VSSDSLLNPT QKNTYLSCKD YNSSVLEFNA QQTQDQFPLR HFMDVWTKES ANRSGIPWPE  420
DLKSDLTQLS MSIPMSTTDF SSSSSPNQDK ITVSPLRLSC ELEPSEMGLG VGTNVGETGV  480
KQNAWIPVRW ENSMGGPLGE VLNNTSNVTS TLNLKGDEGD GSPQLGSSPT GVLQRSTFVS  540
LSNSSSAGSL RGETRKTLEG ASLCDDILVS AAHANSTFVP TM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717972.10.0growth-regulating factor 1-like
TrEMBLA0A0K9QDT80.0A0A0K9QDT8_SPIOL; Uncharacterized protein
STRINGXP_010679671.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-95growth-regulating factor 1