PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010724-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 295aa    MW: 34083.5 Da    PI: 7.6895
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010724-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.57e-09178225451
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                       k+ +r+++NRe+ArrsR RK++ +e+L++ + +L+ + ++  ++l  
  AHYPO_010724-RA 178 EKKRKRMESNRESARRSRMRKQKHMENLTNDSNQLKIQTRERSNQLRL 225
                      6999*******************************9888544433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-10175239IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-6176232No hitNo description
PROSITE profilePS502179.76177240IPR004827Basic-leucine zipper domain
PfamPF001705.5E-7178235IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.66E-9179233No hitNo description
CDDcd147022.16E-15180229No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMSTLLPFEY LLANNSYNNP LFSNDGFTSW ENLESSFSSI DHKPIFEKGN DQIISQLKSN  60
HSHNHAGHHA SFDKLDGHHA SLELHQECPN LDRHHDGSNL GLENHFLYEP NLSHPNQNSP  120
NFYNKLSPDN AQSPTSVLLS PSSGSDGSDD SNQNQNQHGS NLDSYQDHEP AQVAITEEKK  180
RKRMESNRES ARRSRMRKQK HMENLTNDSN QLKIQTRERS NQLRLMTHHI QLVRKENDRL  240
KAESIILQRK LYQLGQIWQL QQLQQQQRLY QQQRHHIRHF SSSTPSSATT QMII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191198RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852917.17e-60uncharacterized protein LOC110792423
STRINGXP_010679668.12e-56(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.23e-20basic leucine-zipper 6