PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010751-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 240aa    MW: 26261.7 Da    PI: 7.9357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010751-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.83.1e-322103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q
  AHYPO_010751-RA   2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHVCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  AHYPO_010751-RA  96 AAVETVLR 103
                      **998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.1091107IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR  60
PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PEFLIGAPAS  120
PVPATTDAAD DNSEILCPSR TNNTNAWRKQ ISASVTMIQQ QYQKNSQFSP PRFTNSKRRK  180
QDDDCHVTQL DLSLTPPPFL HAPPSQRPGT PSLNSEESAT TVSFESDNYY QPKTLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021751411.11e-146LOB domain-containing protein 38-like
SwissprotQ9SN238e-83LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0K9Q7W41e-120A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRINGXP_010679613.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-85LOB domain-containing protein 38