PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010752-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 313aa    MW: 34702.3 Da    PI: 5.8619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010752-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10118163555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+ + + f  L  l+P +     kK++K +iL +Av+Y+k+L+
  AHYPO_010752-RA 118 HILAERKRRELLSQLFISLSALVPGL-----KKMDKTSILGEAVKYMKQLK 163
                      8899**********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.551113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8118162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-14118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-10118167No hitNo description
SMARTSM003536.6E-12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEAWLAELEK DLSSVSCLMN DSYNQMPGST MGVDISYLYS AESDTNKSPL SVWDIDTILM  60
EQVTTPTLNN WDNSGNYDIC HKDKDKDKDK NKNNDKIRKQ GLSSGAKRKR QPSQVHDHIL  120
AERKRRELLS QLFISLSALV PGLKKMDKTS ILGEAVKYMK QLKENVKTLE EVVAKRTVQS  180
MVVLNKSQLI IDNDGDDNDS SSTMDDNCAS GTSGNNGGDG GGREVYNLNG SLPEIEVKIL  240
GNTLLLRLNC ENKKGITTKL FAVLDNYNCT VTNSSAMAFE TLTLDITVVA QIEGDFNKKL  300
KQFMRTLRSA LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107125RKRQPSQVHDHILAERKRR
2121126ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666979.12e-90PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C85e-83A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010666979.18e-90(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-41bHLH family protein