PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010754-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 256aa    MW: 28537.2 Da    PI: 8.4228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010754-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10100145555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+ + + f  L  l+P +     kK++K +iL +Av+Y+k+L+
  AHYPO_010754-RA 100 HILAERKRRELLSQLFISLSALVPGL-----KKMDKTSILGEAVKYMKQLK 145
                      8899**********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.55195144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1499157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8100144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-14100155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-10100149No hitNo description
SMARTSM003536.6E-12101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNDSYNQMPG STMGVDISYL YSAESDTNKS PLSVWDIDTI LMEQVTTPTL NNWDNSGNYD  60
ICHKDKDKDK DKNKNNDKIR KQGLSSGAKR KRQPSQVHDH ILAERKRREL LSQLFISLSA  120
LVPGLKKMDK TSILGEAVKY MKQLKENVKT LEEVVAKRTV QSMVVLNKSQ LIIDNDGDDN  180
DSSSTMDDNC ASGTSGNNGG DGGGREVYNL NGSLPEIEVK ILGNTLLLRL NCENKKGITT  240
KLFAVLDNYN YRRRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189107RKRQPSQVHDHILAERKRR
2103108ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666979.13e-68PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C84e-67A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010666979.11e-67(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-28bHLH family protein