PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010774-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 166aa    MW: 18601.7 Da    PI: 8.7329
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010774-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.6e-112578558
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                     ++ +r+q+NRe+ArrsR RK++ ++ L   + +L + N +  ++++  +++  k
  AHYPO_010774-RA 25 RKRKRMQSNRESARRSRMRKQKHLDDLMVQINNLRTTNNQVLNNINITTQQFVK 78
                     67899*********************************9998888877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-101477No hitNo description
SMARTSM003382.7E-142185IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9562386IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-112577No hitNo description
PfamPF001707.1E-82576IPR004827Basic-leucine zipper domain
CDDcd147021.02E-192676No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGSSTGITSP GSSSSLQQNS SSDERKRKRM QSNRESARRS RMRKQKHLDD LMVQINNLRT  60
TNNQVLNNIN ITTQQFVKIE LENSVLRAQM AELNSRFQSL NEIINALNCG NNNQNLGVLG  120
CDYGRDGVFS IIPEPFTSDG FVMNPWNSTD YANQPIMASA DMFQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12445RKRKRMQSNRESARRSRMRKQK
23744RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671337.15e-81PREDICTED: bZIP transcription factor 11
SwissprotC0Z2L52e-43BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0J8FKP21e-79A0A0J8FKP2_BETVU; Uncharacterized protein
STRINGXP_010671337.12e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-38basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]