PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010780-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 176aa MW: 20083 Da PI: 9.2474

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010780-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.3	7.8e-11	5	85	25	90
FAR1 25 ngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + ++ + Cs g r++ekk + +++r+ a trtgC+a+++ kk++ g +ev++ +l HnH+++ AHYPO_010780-RA 5 TSDVNEKYYLCSATGIRNTEKKVvketqshdtegtektKIRKERRMAITRTGCNACIRAKKNTFGLFEVIDHVLAHNHSMT 85 56688999*********9999999***99977667778999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-8	5	85	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKQVTSDVNE KYYLCSATGI RNTEKKVVKE TQSHDTEGTE KTKIRKERRM AITRTGCNAC 60 IRAKKNTFGL FEVIDHVLAH NHSMTRTQWN YRHRSERQMS DHKKEAIETM QLAGLQPMES 120 YRLLSAEAGG EYTIAHTVKD HLNFCHKLKM KKIDGGDANS VIEQIMPLAH KSECC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770696.1	2e-50	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	AHYPO_010780-RA